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Automated Methods Development
Automated Method Development (AMD) is used to optimize CID conditions for
product ion formation in a MS/MS method. AMD uses up to 10 different sets of
conditions for the same parent ion.
When using Automated Method Development (AMD) option, set the Saturn
method for 1 microscan per analytical scan by adjusting the Scan Time
(Segments Setpoints). The easiest way to do this is to use the down-scroll
button in the Scan Time edit control to reduce the time to its lower limit. The
software calculates the minimum scan time allowed based on the duration of
one microscan for the current method parameters. This will ensure that the
maximum number of cycles through the different voltages (scan segments)
across each peak is performed.
A strategy for using AMD to determine the optimum excitation storage level
and excitation voltage:
1. Determine the parent ion and retention time for each compound from an
injection using normal EI mode. Build a multi-segment acquisition
method, with one segment per compound.
2. Use the default conditions with Automatic Methods Development to
determine the mass of the product ion(s). AMD allows the CID voltage to
be incremented on a scan-by-scan basis (25v, 30v, 35v) for up to 10
scans and then the cycle repeats.
3. Once the m/z value of the product ion is determined, make the following
calculation. Product ion m/z divided by 1.4 = the highest CID rf excitation
level. For example, if the product ion is m/z 140, then the rf excitation
level must be no higher than 100. This will ensure good trapping
efficiency of the product ion. The value of 1.4 is a ratio of the “q” ejection
value (.908) and the “q” value at Beta(1/3) of 0.63.
4. Once the rf excitation level is set, the only variable to optimize is the CID
voltage. This can be done with two injections using AMD. The first
injection can use voltage increments of 10 volts (Nonresonant) or 0.2
volts (Resonant). Once you get close with this first injection, lower the
voltage increment and optimize the voltage with the second injection.
Determining the Optimum Voltage for Nonresonant
Excitation Using Automated Methods Development
(AMD)
Follow these steps to determine the optimum voltage for nonresonant excitation
by using AMD while injecting the parent compound.
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